miRBase entry: dre-mir-138-1

Stem-loop dre-mir-138-1


Accession
MI0002002
Description
Danio rerio dre-mir-138-1 precursor miRNA
Gene family
MIPF0000075; mir-138

Literature search
4 open access papers mention dre-mir-138-1
(9 sentences)

Sequence

6986 reads, 275 reads per million, 11 experiments
ugugugcugcAGCUGGUGUUGUGAAUCAGGCCGaugucacacgucagcgauaacccgGCUAUUUCACAACACCAGGGUggcaccaca
((((((((((..(((((((((((((...(((((.((((.(......).))))...)))))..))))))))))))).)))))).))))

Structure
    -      AG             UCA     --a    a ac 
ugug ugcugc  CUGGUGUUGUGAA   GGCCG   uguc c  g
|||| ||||||  |||||||||||||   |||||   |||| |   
acac acggUG  GACCACAACACUU   UCGgc   auag g  u
    c      -G             -UA     cca    c ac 


Annotation confidence High
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Genome context
chr18: 17580159-17580245 [+]

Database links

Mature dre-miR-138-5p

Accession MIMAT0001835
Description Danio rerio dre-miR-138-5p mature miRNA
Sequence 11 - AGCUGGUGUUGUGAAUCAGGCCG - 33
Evidence experimental
cloned [1]

Mature dre-miR-138-3p

Accession MIMAT0031973
Description Danio rerio dre-miR-138-3p mature miRNA
Sequence 58 - GCUAUUUCACAACACCAGGGU - 78
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293