miRBase entry: dre-mir-135c-2

Stem-loop dre-mir-135c-2


Accession
MI0001997
Description
Danio rerio dre-mir-135c-2 precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
5 open access papers mention dre-mir-135c-2
(12 sentences)

Sequence

117 reads, 33 reads per million, 5 experiments
ugcagucuaaagcaacucaaaacacuacugugcuuUAUGGCUUUCUAUUCCUAUGUGauuuugauaugauguaucauguaggguucaaagccauuagguacagaguggcuuaucagcaguggaugua
((((.((((..((.........((((.((((((((.((((((((....(((((((((((.............)))))))))))...)))))))).))))))))))))........))..))))))))

Structure
    g    aa  aacucaaaa    a        U        CUAU           uuuga 
ugca ucua  gc         cacu cugugcuu AUGGCUUU    UCCUAUGUGau     u
|||| ||||  ||         |||| |||||||| ||||||||    |||||||||||     a
augu aggu  cg         guga gacaugga uaccgaaa    gggauguacua     u
    -    ga  -acuauucg    -        u        -cuu           uguag 


Annotation confidence Not enough data
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Genome context
chr23: 18063173-18063299 [-]

Database links

Mature dre-miR-135c

Accession MIMAT0001833
Description Danio rerio dre-miR-135c mature miRNA
Sequence 36 - UAUGGCUUUCUAUUCCUAUGUG - 57
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293