Stem-loop sequence dre-mir-135c-2

Accession

MI0001997 (change log)

Previous IDs

dre-mir-135-2

Description

Danio rerio miR-135c-2 stem-loop

Gene family

MIPF0000028; mir-135

Literature search

5 open access papers mention dre-mir-135c-2
(12 sentences)

Stem-loop

       g    aa  aacucaaaa    a        u        cuau           uuuga 
5' ugca ucua  gc         cacu cugugcuu auggcuuu    uccuaugugau     u
   |||| ||||  ||         |||| |||||||| ||||||||    |||||||||||     a
3' augu aggu  cg         guga gacaugga uaccgaaa    gggauguacua     u
       -    ga  -acuauucg    -        u        -cuu           uguag 

Deep sequencing

288 reads, 12.5 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 18063173-18063299 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir135c-2
• EntrezGene:mir135c-2
• RNAcentral:URS000075A1DD_7955
• miRBase Tracker:MI0001997

Mature sequence dre-miR-135c

• Accession: MIMAT0001833
• Previous IDs: dre-miR-135
• Sequence: 36 - uauggcuuucuauuccuaugug - 57
• Deep sequencing: 574 reads, 8 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075DE6E_7955
• Predicted targets:
  • TargetScanFish:dre-miR-135c

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).