Stem-loop sequence dre-mir-133c

Accession

MI0001995 (change log)

Description

Danio rerio miR-133c stem-loop

Gene family

MIPF0000029; mir-133

Literature search

23 open access papers mention dre-mir-133c
(73 sentences)

Stem-loop

   -gaaa      u    u      aa  c  a     gu ggg  u 
5'      cacggc uagu gcuggu  aa gg accaa  c   ug u
        |||||| |||| ||||||  || || |||||  |   ||  
3'      gugccg guca cgacca  uu cc ugguu  g   gc u
   cuuaa      c    u      ac  u  c     ug aga  g 

Deep sequencing

12136 reads, 375 reads per million, 8 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr17: 5962975-5963065 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-133c

• dre-mir-206-2: chr17: 5967238-5967346 [-]
• dre-mir-133c: chr17: 5962975-5963065 [-]

Database links

• EntrezGene:mir133c
• EntrezGene:mir133c
• RNAcentral:URS000075D7A8_7955
• miRBase Tracker:MI0001995

Mature sequence dre-miR-133c-5p

• Accession: MIMAT0031971
• Sequence: 17 - gcugguaaaacggaaccaaguc - 38
• Deep sequencing: 4567 reads, 5 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000785F41_7955

Mature sequence dre-miR-133c-3p

• Accession: MIMAT0001832
• Previous IDs: dre-miR-133c
• Sequence: 55 - uuuggucccuuucaaccagcua - 76
• Deep sequencing: 7095 reads, 8 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075AA59_7955
• Predicted targets:
  • TargetScanFish:dre-miR-133c

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).