Stem-loop sequence dre-mir-133a-1

AccessionMI0001993 (change log)
DescriptionDanio rerio miR-133a-1 stem-loop
Gene family MIPF0000029; mir-133
Literature search

27 open access papers mention dre-mir-133a-1
(118 sentences)

          ccacaau  uuu    a       aa  u  a        accuc 
5' caucaaa       gc   gcua agcuggu  aa gg accaaauc     u
   |||||||       ||   |||| |||||||  || || ||||||||      
3' guaguuu       cg   cgau ucgacca  uu cc ugguuuag     u
          -------  uau    g       ac  c  c        guaac 
Get sequence
Deep sequencing
21383 reads, 500 reads per million, 11 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr2: 4114118-4114216 [-]
ENSDART00000077966 ; MIB1 (1 of 2)-201; intron 1
Clustered miRNAs
< 10kb from dre-mir-133a-1
dre-mir-1-2chr2: 4116314-4116400 [-]
dre-mir-133a-1chr2: 4114118-4114216 [-]
Database links

Mature sequence dre-miR-133a-5p

Accession MIMAT0003404
Previous IDsdre-miR-133a*

25 - 


 - 46

Get sequence
Deep sequencing7166 reads, 5 experiments
Evidence experimental; cloned [1]
Database links

Mature sequence dre-miR-133a-3p

Accession MIMAT0001830
Previous IDsdre-miR-133a

62 - 


 - 83

Get sequence
Deep sequencing28428 reads, 11 experiments
Evidence experimental; cloned [1]
Database links
Predicted targets


PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).