Stem-loop sequence dre-mir-133a-1

Accession

MI0001993 (change log)

Description

Danio rerio miR-133a-1 stem-loop

Gene family

MIPF0000029; mir-133

Literature search

27 open access papers mention dre-mir-133a-1
(118 sentences)

Stem-loop

          ccacaau  uuu    a       aa  u  a        accuc 
5' caucaaa       gc   gcua agcuggu  aa gg accaaauc     u
   |||||||       ||   |||| |||||||  || || ||||||||      
3' guaguuu       cg   cgau ucgacca  uu cc ugguuuag     u
          -------  uau    g       ac  c  c        guaac 

Deep sequencing

21383 reads, 500 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr2: 4114118-4114216 [-]
• Overlapping transcripts:

  antisense

  ENSDART00000077966 ; MIB1 (1 of 2)-201; intron 1

Clustered miRNAs

< 10kb from dre-mir-133a-1

• dre-mir-1-2: chr2: 4116314-4116400 [-]
• dre-mir-133a-1: chr2: 4114118-4114216 [-]

Database links

• EntrezGene:mir133a-1
• EntrezGene:mir133a-1
• miRBase Tracker:MI0001993

Mature sequence dre-miR-133a-5p

• Accession: MIMAT0003404
• Previous IDs: dre-miR-133a*
• Sequence: 25 - agcugguaaaauggaaccaaau - 46
• Deep sequencing: 7166 reads, 5 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000383E7F_7955

Mature sequence dre-miR-133a-3p

• Accession: MIMAT0001830
• Previous IDs: dre-miR-133a
• Sequence: 62 - uuugguccccuucaaccagcug - 83
• Deep sequencing: 28428 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00004C9052_7955
• Predicted targets:
  • TargetScanFish:dre-miR-133a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).