Stem-loop dre-mir-133a-1

Accession

MI0001993

Description

Danio rerio dre-mir-133a-1 precursor miRNA

Gene family

MIPF0000029; mir-133

Literature search

27 open access papers mention dre-mir-133a-1
(122 sentences)

Sequence

9822 reads, 526 reads per million, 11 experiments

caucaaaccacaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaccucuucaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugcuuugaug
(((((((.......((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))))))

Structure

       ccacaau  uuu    a       AA  U  A        accuc 
caucaaa       gc   gcua AGCUGGU  AA GG ACCAAAUc     u
|||||||       ||   |||| |||||||  || || ||||||||      
guaguuu       cg   cgau UCGACCA  UU CC UGGUUUag     u
       -------  uau    G       AC  C  C        guaac 

Annotation confidence Not enough data

Genome context

chr2: 4114118-4114216 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-133a-1

Mature dre-miR-133a-3p

• Accession: MIMAT0001830
• Description: Danio rerio dre-miR-133a-3p mature miRNA
• Sequence: 62 - UUUGGUCCCCUUCAACCAGCUG - 83
• Evidence: experimental ; cloned [1]

Mature dre-miR-133a-5p

• Accession: MIMAT0003404
• Description: Danio rerio dre-miR-133a-5p mature miRNA
• Sequence: 25 - AGCUGGUAAAAUGGAACCAAAU - 46
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293