Stem-loop dre-mir-133a-2

Accession

MI0001992

Description

Danio rerio dre-mir-133a-2 precursor miRNA

Gene family

MIPF0000029; mir-133

Literature search

28 open access papers mention dre-mir-133a-2
(123 sentences)

Sequence

9819 reads, 525 reads per million, 11 experiments

aaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAucaacuguuuuauggaUUUGGUCCCCUUCAACCAGCUGuagcugugcauu
(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))

Structure

     uuu    a       AA  U  A        aacug 
aaugc   gcua AGCUGGU  AA GG ACCAAAuc     u
|||||   |||| |||||||  || || ||||||||      
uuacg   cgau UCGACCA  UU CC UGGUUUag     u
     ugu    G       AC  C  C        guauu 

Annotation confidence Not enough data

Genome context

chr23: 7172120-7172203 [-]

Mature dre-miR-133a-3p

• Accession: MIMAT0001830
• Description: Danio rerio dre-miR-133a-3p mature miRNA
• Sequence: 51 - UUUGGUCCCCUUCAACCAGCUG - 72
• Evidence: experimental ; cloned [1]

Mature dre-miR-133a-2-5p

• Accession: MIMAT0031970
• Description: Danio rerio dre-miR-133a-2-5p mature miRNA
• Sequence: 14 - AGCUGGUAAAAUGGAACCAAA - 34
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293