Stem-loop sequence dre-mir-129-1

Accession

MI0001983 (change log)

Description

Danio rerio miR-129-1 stem-loop

Gene family

MIPF0000073; mir-129

Literature search

3 open access papers mention dre-mir-129-1
(12 sentences)

Stem-loop

          u     -       c   cu      g   -  c  ug 
5' guccuuu caggu cuuuuug ggu  gggcuu cug uu cu  a
   ||||||| ||||| ||||||| |||  |||||| ||| || ||   
3' caggaga gucua gaaaaac cca  cccgaa gac ga ga  a
          c     u       c   uu      g   c  u  cc 

Deep sequencing

549 reads, 11.1 reads per million, 9 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr4: 19047466-19047555 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir129-1
• EntrezGene:mir129-1
• RNAcentral:URS000075DED8_7955
• miRBase Tracker:MI0001983

Mature sequence dre-miR-129-5p

• Accession: MIMAT0001825
• Previous IDs: dre-miR-129
• Sequence: 14 - cuuuuugcggucugggcuugcu - 35
• Deep sequencing: 1532 reads, 9 experiments
• Evidence: experimental; cloned [1]

Mature sequence dre-miR-129-1-3p

• Accession: MIMAT0031968
• Sequence: 57 - gaagcccuuaccccaaaaagu - 77
• Deep sequencing: 161 reads, 5 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000765D69_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).