Stem-loop dre-mir-124-6

Accession

MI0001971

Description

Danio rerio dre-mir-124-6 precursor miRNA

Gene family

MIPF0000021; mir-124

Literature search

23 open access papers mention dre-mir-124-6
(80 sentences)

Sequence

4522 reads, 307 reads per million, 8 experiments

ggguggugacacaggcccgccacucugCGUGUUCACGGCGGACCUUGAUuuaauauccauacaauUAAGGCACGCGGUGAAUGCCAAgagaggggucuuaaaacgacaaaccc
((((.((.....((((((....((((..((((((((.(((..((((((((............))))))))..))).))))))))..))))..)))))).......))..))))

Structure

    -g  --gacac      gcca    gC        G   GA        uaaua 
gggu  gu       aggccc    cucu  GUGUUCAC GCG  CCUUGAUu     u
||||  ||       ||||||    ||||  |||||||| |||  ||||||||      
ccca  ca       ucuggg    gagA  CGUAAGUG CGC  GGAAUuaa     c
    aa  gcaaaau      --ga    AC        G   AC        cauac 

Annotation confidence High

Genome context

chr8: 23122762-23122874 [-]

Mature dre-miR-124-3p

• Accession: MIMAT0001819
• Description: Danio rerio dre-miR-124-3p mature miRNA
• Sequence: 66 - UAAGGCACGCGGUGAAUGCCAA - 87
• Evidence: experimental ; cloned [1]

Mature dre-miR-124-6-5p

• Accession: MIMAT0031962
• Description: Danio rerio dre-miR-124-6-5p mature miRNA
• Sequence: 28 - CGUGUUCACGGCGGACCUUGAU - 49
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293