Stem-loop sequence dre-mir-107a

Accession

MI0001963 (change log)

Previous IDs

dre-mir-107-1;dre-mir-107

Description

Danio rerio miR-107 stem-loop

Gene family

MIPF0000024; mir-103

Literature search

5 open access papers mention dre-mir-107a
(11 sentences)

Stem-loop

   -----  u       c   --   u  u          u    ugg a 
5'      uc gugugcu uga  gcu cu uacaguguug cuug   c u
        || ||||||| |||  ||| || |||||||||| ||||   | g
3'      ag cacacga acu  cgg ga auguuacgac gaac   g g
   cgaca  u       c   au   -  c          -    -ua a 

Deep sequencing

30124 reads, 1.03e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr12: 16960693-16960781 [+]
• Overlapping transcripts:

  sense

  OTTDART00000036913 ; pank1b-001; intron 5

  ENSDART00000020824 ; pank1b-001; intron 5

Database links

• EntrezGene:mir107
• EntrezGene:mir107
• RNAcentral:URS000075DF9C_7955
• miRBase Tracker:MI0001963

Mature sequence dre-miR-107a-5p

• Accession: MIMAT0031959
• Sequence: 14 - agcuucuuuacaguguugucuug - 36
• Deep sequencing: 477 reads, 10 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000076375F_7955

Mature sequence dre-miR-107a-3p

• Accession: MIMAT0001817
• Previous IDs: dre-miR-107a
• Sequence: 51 - agcagcauuguacagggcuauca - 73
• Deep sequencing: 29647 reads, 11 experiments
• Evidence: by similarity; MI0000114
• Database links:
  • RNAcentral:URS00005743AE_7955
• Predicted targets:
  • TargetScanFish:dre-miR-107

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).