Stem-loop sequence dre-mir-30e-2

Accession

MI0001950 (change log)

Description

Danio rerio miR-30e-2 stem-loop

Gene family

MIPF0000005; mir-30

Literature search

11 open access papers mention dre-mir-30e-2
(141 sentences)

Stem-loop

   uacg    a            uu           ggug a 
5'     ggcu cuguaaacaucc  gacuggaagcu    c c
       |||| ||||||||||||  |||||||||||    |  
3'     ccga gacguuuguagg  cugacuuucga    g a
   ucaa    c            --           ggua u 

Deep sequencing

72772 reads, 2.76e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr13: 27795130-27795209 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-30e-2

• dre-mir-30e-2: chr13: 27795130-27795209 [+]
• dre-mir-30c: chr13: 27804067-27804145 [+]

Database links

• EntrezGene:mir30e-2
• EntrezGene:mir30e-2
• RNAcentral:URS000075A27E_7955
• miRBase Tracker:MI0001950

Mature sequence dre-miR-30e-5p

• Accession: MIMAT0001807
• Previous IDs: dre-miR-30e
• Sequence: 11 - uguaaacauccuugacuggaag - 32
• Deep sequencing: 65999 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00001DE669_7955
• Predicted targets:
  • TargetScanFish:dre-miR-30e

Mature sequence dre-miR-30e-3p

• Accession: MIMAT0003402
• Previous IDs: dre-miR-30e*
• Sequence: 51 - cuuucagucggauguuugcagc - 72
• Deep sequencing: 6770 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000065D58_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).