Stem-loop dre-mir-30c

Accession

MI0001944

Description

Danio rerio dre-mir-30c precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

12 open access papers mention dre-mir-30c
(133 sentences)

Sequence

19121 reads, 1094 reads per million, 11 experiments

cuucagggagUGUAAACAUCCUACACUCUCAGcuggagcgcagccgaggCCGGGAGUGGGAUGUUUGCGCUcucuggcu
..((((((((((((((((((((((.(((((.((((.....)))).)))...))..))))))))))))))))))))))..

Structure

cu                      -A  ---   A    g 
  ucagggagUGUAAACAUCCUAC  CU   CUC Gcug a
  ||||||||||||||||||||||  ||   ||| |||| g
  ggucucUCGCGUUUGUAGGGUG  GG   gag cgac c
uc                      AG  CCg   c    g 

Annotation confidence High

Genome context

chr13: 27804067-27804145 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-30c

Mature dre-miR-30c-5p

• Accession: MIMAT0001805
• Description: Danio rerio dre-miR-30c-5p mature miRNA
• Sequence: 11 - UGUAAACAUCCUACACUCUCAG - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-30c-3p

• Accession: MIMAT0031952
• Description: Danio rerio dre-miR-30c-3p mature miRNA
• Sequence: 50 - CCGGGAGUGGGAUGUUUGCGCU - 71
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293