Stem-loop dre-mir-30a

Accession

MI0001940

Description

Danio rerio dre-mir-30a precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

10 open access papers mention dre-mir-30a
(152 sentences)

Sequence

408 reads, 63 reads per million, 8 experiments

ggcuccuugcaguUGUAAACAUUCCCGACUGGAAGuuguaaugcagaaaaucucagCUUUCAGUCUGAUGUUUGCUGCuacugguggcc
((((.((.(.(((.(((((((((...((((((((((((..((.......))..)))))))))))).))))))))).))).).)).))))

Structure

    c  u c   U         CCC            ua  gc 
ggcu cu g agu GUAAACAUU   GACUGGAAGuug  au  a
|||| || | ||| |||||||||   ||||||||||||  ||  g
ccgg gg c uCG CGUUUGUAG   CUGACUUUCgac  ua  a
    u  u a   U         --U            uc  aa 

Annotation confidence High

Genome context

chr19: 4737576-4737664 [+]

Mature dre-miR-30a-5p

• Accession: MIMAT0001803
• Description: Danio rerio dre-miR-30a-5p mature miRNA
• Sequence: 14 - UGUAAACAUUCCCGACUGGAAG - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-30a-3p

• Accession: MIMAT0031951
• Description: Danio rerio dre-miR-30a-3p mature miRNA
• Sequence: 57 - CUUUCAGUCUGAUGUUUGCUGC - 78
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293