Stem-loop dre-mir-29b-1

Accession

MI0001933

Description

Danio rerio dre-mir-29b-1 precursor miRNA

Gene family

MIPF0000009; mir-29

Literature search

14 open access papers mention dre-mir-29b-1
(158 sentences)

Sequence

470 reads, 71 reads per million, 11 experiments

cugcuccuggaagcugaauucagauggugccauagaguauuuuauggcaucUAGCACCAUUUGAAAUCAGUGUuccugggccg
..((.((.(((((((((.((((((((((((..((((((........)).)))))))))))))))).))))).)))).))))..

Structure

cu  u  u    -     a            ca    -  auu 
  gc cc ggaa gcuga uucagauggugc  uaga gu   u
  || || |||| ||||| ||||||||||||  |||| ||    
  cg gg ccuU UGACU AAGUUUACCACG  AUcu cg   u
gc  -  u    G     A            --    a  gua 

Annotation confidence High

Genome context

chr6: 47467910-47467992 [+]

Mature dre-miR-29b

• Accession: MIMAT0001801
• Description: Danio rerio dre-miR-29b mature miRNA
• Sequence: 52 - UAGCACCAUUUGAAAUCAGUGU - 73
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293