Stem-loop sequence dre-mir-29b-1

Accession

MI0001933 (change log)

Description

Danio rerio miR-29b-1 stem-loop

Gene family

MIPF0000009; mir-29

Literature search

14 open access papers mention dre-mir-29b-1
(148 sentences)

Stem-loop

   cu  u  u    -     a            ca    -  auu 
5'   gc cc ggaa gcuga uucagauggugc  uaga gu   u
     || || |||| ||||| ||||||||||||  |||| ||    
3'   cg gg ccuu ugacu aaguuuaccacg  aucu cg   u
   gc  -  u    g     a            --    a  gua 

Deep sequencing

1093 reads, 63.6 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr6: 47467910-47467992 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir29b-1
• EntrezGene:mir29b-1
• RNAcentral:URS000075E7F0_7955
• miRBase Tracker:MI0001933

Mature sequence dre-miR-29b

• Accession: MIMAT0001801
• Sequence: 52 - uagcaccauuugaaaucagugu - 73
• Deep sequencing: 2126 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00004D1411_7955
• Predicted targets:
  • TargetScanFish:dre-miR-29b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).