miRBase entry: dre-mir-27d

Stem-loop dre-mir-27d


Accession
MI0001931
Description
Danio rerio dre-mir-27d precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
7 open access papers mention dre-mir-27d
(20 sentences)

Sequence

3221 reads, 285 reads per million, 11 experiments
uucugagcgggugcagagcuuggcugauuggugaacgugcauggcuuguguuuuugUUCACAGUGGCUAAGUUCUUCAcccgaaaagaa
.(((...((((((.(((((((((((.((((.((((((.((((.....))))...))))))))))))))))))))).))))))...))).

Structure
u   gag      c           g    g      --u    g 
 ucu   cgggug agagcuuggcu auug ugaacg   gcau g
 |||   |||||| ||||||||||| |||| ||||||   |||| c
 aga   gcccAC UCUUGAAUCGG UGAC ACUUgu   ugug u
a   aaa      U           -    -      uuu    u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr10: 15954727-15954815 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-27d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-27d

Accession MIMAT0001799
Description Danio rerio dre-miR-27d mature miRNA
Sequence 57 - UUCACAGUGGCUAAGUUCUUCA - 78
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293