miRBase entry: dre-mir-22b

Stem-loop dre-mir-22b


Accession
MI0001912
Description
Danio rerio dre-mir-22b precursor miRNA
Gene family
MIPF0000053; mir-22

Literature search
5 open access papers mention dre-mir-22b
(7 sentences)

Sequence

3094 reads, 247 reads per million, 11 experiments
guuacuucacaguCGUUCUUCACUGGCUAGCUUUAuguggcagcaccuuaAAGCUGCCAGUUGAAGAGCUGUuguggguaac
((((((.(((((..(((((((((((((.(((((((.(((....)))..)))))))))))).))))))))..)))))))))))

Structure
      u     uC        -     U       -u   g 
guuacu cacag  GUUCUUCA CUGGC AGCUUUA  gug c
|||||| |||||  |||||||| ||||| |||||||  |||  
caaugg guguU  CGAGAAGU GACCG UCGAAau  cac a
      -     GU        U     -       uc   g 


Annotation confidence High
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Genome context
chr5: 12610802-12610883 [+]

Database links

Mature dre-miR-22b-3p

Accession MIMAT0001789
Description Danio rerio dre-miR-22b-3p mature miRNA
Sequence 51 - AAGCUGCCAGUUGAAGAGCUGU - 72
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-22b-5p

Accession MIMAT0031943
Description Danio rerio dre-miR-22b-5p mature miRNA
Sequence 14 - CGUUCUUCACUGGCUAGCUUUA - 35
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293