Stem-loop sequence dre-mir-22a

Accession

MI0001910 (change log)

Previous IDs

dre-mir-22a-1

Description

Danio rerio miR-22a stem-loop

Gene family

MIPF0000053; mir-22

Literature search

5 open access papers mention dre-mir-22a
(15 sentences)

Stem-loop

     ug   u              -      a      u  ccuug 
5' gc  acc gcagcaguucuuca cuggca gcuuua gu     u
   ||  ||| |||||||||||||| |||||| |||||| ||      
3' cg  ugg uguugucaagaagu gaccgu cgaaau cg     g
     gu   -              c      -      -  accau 

Deep sequencing

212887 reads, 1.74e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr15: 24908394-24908479 [-]	intergenic
KZ114948.1: 258114-258199 [-]	intergenic

Database links

• EntrezGene:mir22a-1
• EntrezGene:mir22a
• RNAcentral:URS000075D762_7955
• miRBase Tracker:MI0001910

Mature sequence dre-miR-22a-5p

• Accession: MIMAT0031942
• Sequence: 14 - aguucuucacuggcaagcuuua - 35
• Deep sequencing: 1980 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000075FEEC_7955

Mature sequence dre-miR-22a-3p

• Accession: MIMAT0001788
• Previous IDs: dre-miR-22a
• Sequence: 55 - aagcugccagcugaagaacugu - 76
• Deep sequencing: 210847 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075B0BF_7955
• Predicted targets:
  • TargetScanFish:dre-miR-22a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).