miRBase entry: dre-mir-18a

Stem-loop dre-mir-18a


Accession
MI0001900
Description
Danio rerio dre-mir-18a precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
5 open access papers mention dre-mir-18a
(6 sentences)

Sequence

3320 reads, 280 reads per million, 11 experiments
ggcuuugugcUAAGGUGCAUCUAGUGCAGAUAgugaaguagacuagcaccuacugcccuaagugcuccuucuggcacgagggu
..(((((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..))))))))))..

Structure
gg          --   U    C   U    A   -  aagu 
  cuuugugcUA  AGG GCAU UAG GCAG UAg ug    a
  ||||||||||  ||| |||| ||| |||| ||| ||    g
  ggagcacggu  ucc cgug auc cguc auc ac    a
ug          cu   u    a   c    -   c  gauc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr1: 3298006-3298088 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from dre-mir-18a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-18a

Accession MIMAT0001779
Description Danio rerio dre-miR-18a mature miRNA
Sequence 11 - UAAGGUGCAUCUAGUGCAGAUA - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293