miRBase entry: dre-mir-17a-2

Stem-loop dre-mir-17a-2


Accession
MI0001898
Description
Danio rerio dre-mir-17a-2 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
20 open access papers mention dre-mir-17a-2
(170 sentences)

Sequence

6972 reads, 482 reads per million, 11 experiments
gucacuguaguguCAAAGUGCUUACAGUGCAGGUAguucaauauaaucuACUGCAGUGGAGGCACUUCAAGCuuuaccgugac
(((((.((((.((..(((((((..((.(((((.(((...........)))))))).))..)))))))...)).)))).)))))

Structure
     u    u  -CA       UA  G     G   uuca 
gucac guag gu   AAGUGCU  CA UGCAG UAg    a
||||| |||| ||   |||||||  || ||||| |||    u
cagug cauu CG   UUCACGG  GU ACGUC Auc    a
     c    u  AAC       AG  G     -   uaau 


Annotation confidence High
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Genome context
chr9: 53436944-53437026 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-17a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-17a-5p

Accession MIMAT0001777
Description Danio rerio dre-miR-17a-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUA - 35
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-17a-2-3p

Accession MIMAT0031938
Description Danio rerio dre-miR-17a-2-3p mature miRNA
Sequence 50 - ACUGCAGUGGAGGCACUUCAAGC - 72
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293