Stem-loop sequence dre-mir-16b

Accession

MI0001895 (change log)

Description

Danio rerio miR-16b stem-loop

Gene family

MIPF0000006; mir-15

Literature search

10 open access papers mention dre-mir-16b
(17 sentences)

Stem-loop

        acuu    g g  a     ------     -        g          -ua          ucaaa  a 
5' ccuga    ggcc u ug cagac      uggcu gccuggcu uagcagcacg   aauauuggag     gc c
   |||||    |||| | || |||||      ||||| |||||||| ||||||||||   ||||||||||     ||  
3' gggcu    ccgg g gc gucug      gccgg cggauuga gucgucgugc   uuaugaccuc     cg u
        ----    - g  -     ccauuu     g        g          cag          cuaag  u 

Deep sequencing

24273 reads, 1.52e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr1: 46722379-46722518 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-16b

• dre-mir-15a-1: chr1: 46722622-46722705 [-]
• dre-mir-16b: chr1: 46722379-46722518 [-]

Database links

• EntrezGene:mir16b
• EntrezGene:mir16b
• RNAcentral:URS000075A088_7955
• miRBase Tracker:MI0001895

Mature sequence dre-miR-16b

• Accession: MIMAT0001775
• Sequence: 39 - uagcagcacguaaauauuggag - 60
• Deep sequencing: 24207 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00000F8B2E_7955
• Predicted targets:
  • TargetScanFish:dre-miR-16b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).