miRBase entry: dre-mir-16a

Stem-loop dre-mir-16a


Accession
MI0001894
Description
Danio rerio dre-mir-16a precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
9 open access papers mention dre-mir-16a
(15 sentences)

Sequence

1059 reads, 111 reads per million, 11 experiments
ccuuccucgcuuUAGCAGCACGUAAAUAUUGGUGuguuauagucaaggccaaccccaauauuaugugugcugcuucaguaaggcagg
(((.(((.(((..(((((((((((((((((((.(((((........)))..)).)))))))).)))))))))))..))).))).)))

Structure
   u   c   uU           -        U  --   aua 
ccu ccu gcu  AGCAGCACGUA AAUAUUGG Gu  guu   g
||| ||| |||  ||||||||||| |||||||| ||  |||    
gga gga uga  ucgucgugugu uuauaacc ca  cgg   u
   c   a   cu           a        c  ac   aac 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr15: 1543857-1543943 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-16a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-16a

Accession MIMAT0001774
Description Danio rerio dre-miR-16a mature miRNA
Sequence 13 - UAGCAGCACGUAAAUAUUGGUG - 34
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293