miRBase entry: dre-mir-15b

Stem-loop dre-mir-15b


Accession
MI0001893
Description
Danio rerio dre-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
6 open access papers mention dre-mir-15b
(16 sentences)

Sequence

9169 reads, 811 reads per million, 11 experiments
gucugucgucaucuuuuuauuuagcccugagugcccugUAGCAGCACAUCAUGGUUUGUAaguuauaagggcaaauucCGAAUCAUGAUGUGCUGUCACUgggagccugggaguuucuccauuaacaugacagc
..(((((((...............(((.(.((.(((.((.((((((((((((((((((.((..............)).)))))))))))))))))).)).))).))).)))...............))))))).

Structure
gu       caucuuuuuauuuag   u a  g   u  A                  U  guuaua 
  cugucgu               ccc g gu ccc gU GCAGCACAUCAUGGUUUG Aa      a
  |||||||               ||| | || ||| || |||||||||||||||||| ||       
  gacagua               ggg c cg ggg CA UGUCGUGUAGUACUAAGC uu      g
-c       caauuaccucuuuga   u -  a   U  C                  c  aaacgg 


Annotation confidence High
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Genome context
chr7: 26070874-26071007 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-15b-5p

Accession MIMAT0001773
Description Danio rerio dre-miR-15b-5p mature miRNA
Sequence 39 - UAGCAGCACAUCAUGGUUUGUA - 60
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-15b-3p

Accession MIMAT0031936
Description Danio rerio dre-miR-15b-3p mature miRNA
Sequence 79 - CGAAUCAUGAUGUGCUGUCACU - 100
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293