Stem-loop sequence dre-mir-10d

Accession

MI0001889 (change log)

Previous IDs

dre-mir-10d-1

Description

Danio rerio miR-10d stem-loop

Gene family

MIPF0000033; mir-10

Literature search

10 open access papers mention dre-mir-10d
(172 sentences)

Stem-loop

   u      -uu    ---c              a    g           g    uuuaca 
5'  ggaagc   uguu    cgucgucuauauau cccu uagaaccgaau ugug      c
    ||||||   ||||    |||||||||||||| |||| ||||||||||| ||||      a
3'  cuuucg   gcaa    guagcagguauaug gggg auuuuggcuua acac      g
   a      ucu    aaac              a    -           g    uuaaac 

Deep sequencing

501507 reads, 2.96e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr6: 10867024-10867141 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir10d-1
• EntrezGene:mir10d
• RNAcentral:URS000075B0BE_7955
• miRBase Tracker:MI0001889

Mature sequence dre-miR-10d-5p

• Accession: MIMAT0001771
• Previous IDs: dre-miR-10d
• Sequence: 28 - uacccuguagaaccgaaugugug - 50
• Deep sequencing: 501275 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075E502_7955
• Predicted targets:
  • TargetScanFish:dre-miR-10d

Mature sequence dre-miR-10d-3p

• Accession: MIMAT0003394
• Previous IDs: dre-miR-10d*
• Sequence: 68 - cagauucgguuuuaggggagua - 89
• Deep sequencing: 229 reads, 6 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075C4B6_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).