miRBase entry: dre-mir-9-7

Stem-loop dre-mir-9-7


Accession
MI0001886
Description
Danio rerio dre-mir-9-7 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
22 open access papers mention dre-mir-9-7
(211 sentences)

Sequence

29620 reads, 1156 reads per million, 11 experiments
ggguuaguuuuucUCUUUGGUUAUCUAGCUGUAUGAguuaugaaauaucaUAAAGCUAGAGAACCGAAAGUAgaaacuauaccu
((..((((((((((.(((((((.(((((((.(((((...........))))).))))))).))))))))).))))))))..)).

Structure
-  gu        -  C       A       G     guua 
 gg  uaguuuuu cU UUUGGUU UCUAGCU UAUGA    u
 ||  |||||||| || ||||||| ||||||| |||||    g
 cc  aucaaagA GA AAGCCAA AGAUCGA AUacu    a
u  au        U  -       G       A     auaa 


Annotation confidence High
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Genome context
chr2: 59102169-59102252 [-]

Database links

Mature dre-miR-9-5p

Accession MIMAT0001769
Description Danio rerio dre-miR-9-5p mature miRNA
Sequence 14 - UCUUUGGUUAUCUAGCUGUAUGA - 36
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-9-7-3p

Accession MIMAT0031933
Description Danio rerio dre-miR-9-7-3p mature miRNA
Sequence 51 - UAAAGCUAGAGAACCGAAAGUA - 72
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293