Stem-loop sequence dre-mir-9-2

AccessionMI0001881 (change log)
DescriptionDanio rerio miR-9-2 stem-loop
Gene family MIPF0000014; mir-9
Literature search

24 open access papers mention dre-mir-9-2
(216 sentences)

Stem-loop 
   gcucuccucuggugacuu    acu        u   g   uc               g     g  u c 
5'                   uugc   uggaggcg guu uua  uuugguuaucuagcu uauga ug g u
                     ||||   |||||||| ||| |||  ||||||||||||||| ||||| || |  
3'                   aacg   aucuucgc cga aau  aagccaauagaucga auacu gc c g
   ---cguuacgagguaugc    acu        -   g   ga               a     -  - g
Get sequence
Deep sequencing
50212 reads, 1.6e+03 reads per million, 11 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr10: 43535960-43536095 [-]
intergenic
Database links

Mature sequence dre-miR-9-5p

Accession MIMAT0001769
Previous IDsdre-miR-9
Sequence

42 -  

ucuuugguuaucuagcuguauga

 - 64

Get sequence
Deep sequencing220384 reads, 11 experiments
Evidence experimental; cloned [1]
Database links
Predicted targets

Mature sequence dre-miR-9-3p

Accession MIMAT0003156
Previous IDsdre-miR-9*
Sequence

80 -  

uaaagcuagauaaccgaaagu

 - 100

Get sequence
Deep sequencing93449 reads, 11 experiments
Evidence experimental; array [2], in-situ [2]
Database links

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).
2
PMID:15919954 "MicroRNA expression in zebrafish embryonic development" Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH Science. 309:310-311(2005).