miRBase entry: dre-mir-9-2

Stem-loop dre-mir-9-2


Accession
MI0001881
Description
Danio rerio dre-mir-9-2 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
24 open access papers mention dre-mir-9-2
(219 sentences)

Sequence

41401 reads, 2174 reads per million, 11 experiments
gcucuccucuggugacuuuugcacuuggaggcguguuguuaUCUUUGGUUAUCUAGCUGUAUGAgugugcuggccgucaUAAAGCUAGAUAACCGAAAGUaagagccgcuucuaucagcaacguauggagcauugc
(((((......(((....((((...((((((((.(((.((((.(((((((((((((((.(((((..((....))..))))).))))))))))))))).)))).)))))))))))...))))..)))))))).....

Structure
-----     ccucug   acuu    acu        u   g    C               G     gu  g 
     gcucu      gug    uugc   uggaggcg guu uuaU UUUGGUUAUCUAGCU UAUGA  gu c
     |||||      |||    ||||   |||||||| ||| |||| ||||||||||||||| |||||  ||  
     cgagg      uau    aacg   aucuucgc cga aaUG AAGCCAAUAGAUCGA AUacu  cg u
cguua     ------   --gc    acu        -   g    A               A     gc  g 


Annotation confidence High
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Genome context
chr10: 43535960-43536095 [-]

Database links

Mature dre-miR-9-5p

Accession MIMAT0001769
Description Danio rerio dre-miR-9-5p mature miRNA
Sequence 42 - UCUUUGGUUAUCUAGCUGUAUGA - 64
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-9-3p

Accession MIMAT0003156
Description Danio rerio dre-miR-9-3p mature miRNA
Sequence 80 - UAAAGCUAGAUAACCGAAAGU - 100
Evidence experimental
array [2], in-situ [2]
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15919954
    MicroRNA expression in zebrafish embryonic development
    "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
    "Science (2005) 309:310-311