miRBase entry: dre-let-7b

Stem-loop dre-let-7b


Accession
MI0001865
Description
Danio rerio dre-let-7b precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
41 open access papers mention dre-let-7b
(226 sentences)

Sequence

19089 reads, 1886 reads per million, 11 experiments
ucggacagggUGAGGUAGUAGGUUGUGUGGUUucaggguuguguuuuugccccaucaggaguuaacuauacaaccuacugccuucccugaaggg
.....(((((.(((((((((((((((((((((((..(((.(.((....)).).)))..))...)))))))))))))))))))))))))).....

Structure
ucgga     U                     ---  ag   u u  u 
     caggg GAGGUAGUAGGUUGUGUGGUU   uc  ggu g gu u
     ||||| |||||||||||||||||||||   ||  ||| | ||  
     guccc uuccgucauccaacauaucaa   ag  cua c cg u
gggaa     -                     uug  ga   c c  u 


Annotation confidence High
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Genome context
chr4: 18653148-18653241 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7b

Accession MIMAT0001760
Description Danio rerio dre-let-7b mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUGUGGUU - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293