Stem-loop sequence zma-MIR156k

Accession

MI0001847 (change log)

Description

Zea mays miR156k stem-loop

Gene family

MIPF0000008; MIR156

Literature search

53 open access papers mention zma-MIR156k
(343 sentences)

Stem-loop

   gg      ccc   ---    au        -    -        c     c  c   c      g 
5'   cuuagg   cga   agag  ugacagaa gaga gcgagcac uggcg gg gac ggcaug a
     ||||||   |||   ||||  |||||||| |||| |||||||| ||||| || ||| |||||| a
3'   gagucc   gcu   ucuc  acugucuu cucu cgcucgug gccgc cc cug ccguac c
   --      --u   ccc    cg        u    u        c     -  -   -      g 

Deep sequencing

209748 reads, 6.86e+03 reads per million, 202 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr6: 98967260-98967382 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075C74B_4577
• miRBase Tracker:MI0001847

Mature sequence zma-miR156k-5p

• Accession: MIMAT0001749
• Previous IDs: zma-miR156k
• Sequence: 21 - ugacagaagagagcgagcac - 40
• Deep sequencing: 207570 reads, 196 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000000A4BA_4577

Mature sequence zma-miR156k-3p

• Accession: MIMAT0015208
• Previous IDs: zma-miR156k*
• Sequence: 85 - gcucgcuucucuuucugucagc - 106
• Deep sequencing: 527 reads, 132 experiments
• Evidence: experimental; Illumina [2]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).