Stem-loop sequence zma-MIR171k

Accession

MI0001843 (change log)

Description

Zea mays miR171k stem-loop

Gene family

MIPF0000104; MIR171_2

Literature search

19 open access papers mention zma-MIR171k
(50 sentences)

Stem-loop

   -g    -      gacg      c         u             - u   u 
5'   ggag gaagaa    acaugg gugguauug uucggcucauguc c ucu g
     |||| ||||||    |||||| ||||||||| ||||||||||||| | ||| a
3'   ucuu cuucuu    uguacu cacuauaac aagccgaguguag g agg c
   ag    a      ---a      -         c             u u   u 

Deep sequencing

245 reads, 245 reads per million, 134 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr10: 138536838-138536941 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075C2AA_4577
• miRBase Tracker:MI0001843

Mature sequence zma-miR171k-5p

• Accession: MIMAT0015205
• Previous IDs: zma-miR171k*
• Sequence: 24 - ugguauuguuucggcucaugu - 44
• Deep sequencing: 82 reads, 15 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000075A30C_4577

Mature sequence zma-miR171k-3p

• Accession: MIMAT0001745
• Previous IDs: zma-miR171k
• Sequence: 65 - gugagccgaaccaauaucacu - 85
• Deep sequencing: 122 reads, 111 experiments
• Evidence: experimental; Illumina [2]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).