miRBase entry: zma-MIR171g

Stem-loop zma-MIR171g


Accession
MI0001839
Description
Zea mays zma-MIR171g precursor miRNA
Gene family
MIPF0000104; MIR171_2

Literature search
19 open access papers mention zma-MIR171g
(50 sentences)

Sequence

13 reads, 684 reads per million, 7 experiments
agaacgaggcgacauggcauggUAUUGACUUGGCUCAUCUCUCgcccacaccagaauccacaagugccggagGAGGUGAGCCGAGCCAAUAUCacuucaugucaucuagcgu
...((((((.(((((((..((((((((.(((((((((((((.(.((..(((..(......)..)))..)).)))))))))))))).))))))))..))))))).)))..)))

Structure
aga   --   c       ca        A             U g  ca   ca aa 
   acg  agg gacaugg  uggUAUUG CUUGGCUCAUCUC C cc  cac  g  u
   |||  ||| |||||||  |||||||| ||||||||||||| | ||  |||  |   
   ugc  ucu cuguacu  aCUAUAAC GAGCCGAGUGGAG g gg  gug  c  c
---   ga   a       uc        C             - a  cc   aa ac 


Annotation confidence Not enough data
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Genome context
chr7: 44057814-44057925 [-]

Database links

Mature zma-miR171g-5p

Accession MIMAT0015202
Description Zea mays zma-miR171g-5p mature miRNA
Sequence 23 - UAUUGACUUGGCUCAUCUCUC - 43
Evidence not_experimental

Mature zma-miR171g-3p

Accession MIMAT0001741
Description Zea mays zma-miR171g-3p mature miRNA
Sequence 73 - GAGGUGAGCCGAGCCAAUAUC - 93
Evidence not_experimental

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13