miRBase entry: zma-MIR171i

Stem-loop zma-MIR171i


Accession
MI0001838
Description
Zea mays zma-MIR171i precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
19 open access papers mention zma-MIR171i
(50 sentences)

Sequence

1792 reads, 6821 reads per million, 120 experiments
cugguuggcugagagagugcgaUGUUGGCACGGUUCAAUCAAAucgccggccggguugacuuguUGAUUGAGCCGUGCCAAUAUCacaaccuucucuagccuag
......(((((((((.(((.((((((((((((((((((((((.(((((.....)).)))....)))))))))))))))))))))).).)).))))).))))...

Structure
cugguu    -     a  - c                      ---A   -  g 
      ggcu gagag gu g gaUGUUGGCACGGUUCAAUCAA    ucg cc g
      |||| ||||| || | ||||||||||||||||||||||    ||| || c
      ccga cucuu ca c CUAUAACCGUGCCGAGUUAGUu    agu gg c
---gau    u     c  a a                      guuc   u  g 


Annotation confidence Not enough data
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Genome context
chr1: 278093492-278093595 [+]

Database links

Mature zma-miR171i-5p

Accession MIMAT0015201
Description Zea mays zma-miR171i-5p mature miRNA
Sequence 23 - UGUUGGCACGGUUCAAUCAAA - 43
Evidence experimental
Illumina [2]

Mature zma-miR171i-3p

Accession MIMAT0001740
Description Zea mays zma-miR171i-3p mature miRNA
Sequence 65 - UGAUUGAGCCGUGCCAAUAUC - 85
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13