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miRBase |
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Stem-loop sequence zma-MIR171e |
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Accession | MI0001837 (change log) | ||||
Description | Zea mays miR171e stem-loop | ||||
Gene family | MIPF0000030; MIR171_1 | ||||
Literature search |
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19 open access papers mention zma-MIR171e | ||||
Stem-loop |
agaa u g u u c c - c c - auc 5' auggaa agua cua gauguuggc cggcuca ucaga gac gua gcg gcg ag a |||||| |||| ||| ||||||||| ||||||| ||||| ||| ||| ||| ||| || 3' uaccuu ucau gau cuauaaccg gccgagu agucu uug cgu cgc cgu uc u uacg c - u u u - u - - a gug |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Database links |
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Mature sequence zma-miR171e-5p |
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Accession | MIMAT0015200 |
Previous IDs | zma-miR171e* |
Sequence |
23 - uguuggcucggcucacucaga - 43 |
Deep sequencing | 615 reads, 147 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Mature sequence zma-miR171e-3p |
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Accession | MIMAT0001739 |
Previous IDs | zma-miR171e |
Sequence |
87 - ugauugagccgugccaauauc - 107 |
Deep sequencing | 2247 reads, 173 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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