Stem-loop sequence zma-MIR169g

Accession

MI0001828 (change log)

Description

Zea mays miR169g stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

30 open access papers mention zma-MIR169g
(216 sentences)

Stem-loop

      a  --u    ugc   u   -         u    u       uggu    c   uu c   --u  u   u 
5' cag gc   agcc   cuc ggu agccaagga gacu gccuaca    cucg uag  c ggu   gu gca g
   ||| ||   ||||   ||| ||| ||||||||| |||| |||||||    |||| |||  | |||   || |||  
3' guc cg   ucgg   gag ccg ucgguuccu cugg cgggugu    gggu guc  g ccg   ca cgu c
      -  uuc    --u   u   a         -    -       --uu    c   cu a   uau  c   a 

Deep sequencing

3526 reads, 2.46e+03 reads per million, 194 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr2: 67281149-67281288 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001828

Mature sequence zma-miR169g

• Accession: MIMAT0001730
• Sequence: 21 - uagccaaggaugacuugccua - 41
• Deep sequencing: 2087 reads, 172 experiments
• Evidence: by similarity; MI0001122

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).