Stem-loop zma-MIR168b

Accession

MI0001825

Description

Zea mays zma-MIR168b precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

30 open access papers mention zma-MIR168b
(142 sentences)

Sequence

66045 reads, 151163 reads per million, 152 experiments

uccgccgcgccgucucgggcUCGCUUGGUGCAGAUCGGGACccgccgcccggccgacgggacggauCCCGCCUUGCAUCAAGUGAAucggagccggcgcagcga
..(((.((((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).)))))).))).

Structure

uc   c      u   g  c             AU     C   ccg    g 
  cgc gcgccg cuc gg UCGCUUGGUGCAG  CGGGA ccg   cccg c
  ||| |||||| ||| || |||||||||||||  ||||| |||   |||| c
  gcg cgcggc gag cu AGUGAACUACGUU  GCCCu ggc   gggc g
-a   a      c   g  A             CC     a   --a    a 

Annotation confidence High

Genome context

chr4: 244520636-244520739 [-]

Mature zma-miR168b-5p

• Accession: MIMAT0001727
• Description: Zea mays zma-miR168b-5p mature miRNA
• Sequence: 21 - UCGCUUGGUGCAGAUCGGGAC - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR168b-3p

• Accession: MIMAT0015192
• Description: Zea mays zma-miR168b-3p mature miRNA
• Sequence: 67 - CCCGCCUUGCAUCAAGUGAA - 86
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13