miRBase entry: zma-MIR399d

Stem-loop zma-MIR399d


Accession
MI0001805
Description
Zea mays zma-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
22 open access papers mention zma-MIR399d
(68 sentences)

Sequence

664 reads, 2070 reads per million, 118 experiments
ucaaggugagaaucacaGUGUGGCUCUCCUCUGGCAUGaaggcgcggcugagaggcacgaacaguuucuggccuuccccugccaaUGCCAAAGGAGAGCUGCCCUGccauucguuagcccugcaa
.((.(((..((((..(((.(((((((((((.((((((...((((.((....(((((..(((....)))..)))))..)))))).)))))).))))))))))).)))..))))....))).))...

Structure
--u  a   --ga    ca   U           C      Gaa    c  cuga     ac   c 
   ca ggu    gaau  caG GUGGCUCUCCU UGGCAU   ggcg gg    gaggc  gaa a
   || |||    ||||  ||| ||||||||||| ||||||   |||| ||    |||||  |||  
   gu ccg    cuua  GUC CGUCGAGAGGA ACCGUa   ccgu cc    uuccg  cuu g
aac  c   auug    cc   C           A      --a    -  --cc     gu   u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr3: 192096065-192096189 [+]

Database links

Mature zma-miR399d-5p

Accession MIMAT0015172
Description Zea mays zma-miR399d-5p mature miRNA
Sequence 18 - GUGUGGCUCUCCUCUGGCAUG - 38
Evidence experimental
Illumina [2]
Database links

Mature zma-miR399d-3p

Accession MIMAT0001707
Description Zea mays zma-miR399d-3p mature miRNA
Sequence 86 - UGCCAAAGGAGAGCUGCCCUG - 106
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13