Stem-loop zma-MIR399a

Accession

MI0001802

Description

Zea mays zma-MIR399a precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

23 open access papers mention zma-MIR399a
(68 sentences)

Sequence

255 reads, 760 reads per million, 2 experiments

ugugaagagggugagaaucacaGUGCGGUUCUCCUCUGGCACGaaggcuggccagagcagcuuauauugccaccacccuuccuUGCCAAAGGAGAAUUGCCCUGccauucacaacccugcaau
.......(((((..((((..(((.(((((((((((.(((((.(((((.(((...(.((((......))))).))).)))))..))))).))))))))))).)))..))))...))))).....

Structure

ugugaag     -ga    ca   U           C     -C     c   cca a    cu 
       agggu   gaau  caG GCGGUUCUCCU UGGCA  Gaagg ugg   g gcag  u
       |||||   ||||  ||| ||||||||||| |||||  ||||| |||   | ||||   
       uccca   cuua  GUC CGUUAAGAGGA ACCGU  cuucc acc   c cguu  a
--uaacg     aca    cc   C           A     uc     c   --a -    au 

Annotation confidence Not enough data

Genome context

chr4: 233617206-233617328 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR399a

Mature zma-miR399a-5p

• Accession: MIMAT0015169
• Description: Zea mays zma-miR399a-5p mature miRNA
• Sequence: 23 - GUGCGGUUCUCCUCUGGCACG - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR399a-3p

• Accession: MIMAT0001704
• Description: Zea mays zma-miR399a-3p mature miRNA
• Sequence: 84 - UGCCAAAGGAGAAUUGCCCUG - 104
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13