miRBase entry: sof-MIR408c

Stem-loop sof-MIR408c


Accession
MI0001767
Description
Saccharum officinarum sof-MIR408c precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
9 open access papers mention sof-MIR408c
(90 sentences)

Sequence

agaagauggguaugguuggagacagggaugaggcagagcaugggauggggccaucaacaaaauuuccaauuucuguccuccgcuaggccgcuacugcauuucuguuugcuugcucacaaaacggagggauuugugagaguuaucaggcagaaagaacaaagaaggugccucccuggugaaguggugauggccugaccugagagggcugagagcucagcugguguccugguguuguugcuuccucccCUGCACUGCCUCUUCCCUGGCuccccaccguugcccuugc
.......(((((((((.((((.((((((.(((((((.(((.((((.(((((((((((((..........((((.((((((((.(((((((.((((((.((((((((((....((((((((.(.....).))))))))......)))))))))).............(((.....)))...)))))).)))))))...)).)))))).))))..........)))..))))).....))))).)))).))).))))))).)))))).))))..)))).)))))....

Structure
agaagau     -    -u    a      u       a   u    u     -----     --   aaauuuccaa    u      -  --c       c      --------------------------a          --cuug        a g 
       gggua uggu  ggag caggga gaggcag gca ggga ggggc     cauca  aca          uuuc guccuc cg   uaggccg uacugc                           uuucuguuug      cucacaaa c g
       ||||| ||||  |||| |||||| ||||||| ||| |||| |||||     |||||  |||          |||| |||||| ||   ||||||| ||||||                           ||||||||||      |||||||| | a
       cccgu gcca  ccuC GUCCCU CUCCGUC CGU cccu cuucg     guggu  ugu          agag cgggag gu   guccggu guggug                           aaagacggac      gaguguuu g g
---cguu     u    cc    G      U       A   C    c     uuguu     cc   ggucgacucg    u      a  cca       a      aaguggucccuccguggaagaaacaag          uauuga        a g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sof-miR408c

Accession MIMAT0001669
Description Saccharum officinarum sof-miR408c mature miRNA
Sequence 247 - CUGCACUGCCUCUUCCCUGGC - 267
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13