Stem-loop sof-MIR159c

Accession

MI0001760

Description

Saccharum officinarum sof-MIR159c precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

7 open access papers mention sof-MIR159c
(39 sentences)

Sequence

ugaagacgacgacgaagaagaagauggcgaagaaaagugaucgaagagcucccuucgauccaauccaggaggggaaguggucgguugcagcugccgguucauggaugccucucuggugcagcaaugacuaaugcucaccugcacuugcaugggugugcaugacccgggagaugaacccaccaucaucuuucccucgugCUUGGAUUGAAGGGAGCUCCUcucucuuuccucucucucu
...(((.((.((.((((.(((.(((.((........)).)))((.((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((...((((....).))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)))))))))))))))))).))))).)))).)))))))..

Structure

uga   c  c  c    a   agauggcgaagaaaagugauc  a                  uc  g         ----    c    g  g  g    u     g      -cucu       caa   - u 
   aga ga ga gaag aga                     ga gagcucccuucgauccaa  ca gaggggaag    uggu gguu ca cu ccgg ucaug augccu     ggugcag   uga c a
   ||| || || |||| |||                     || ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   ||| |  
   ucu cu cu cuuu ucu                     cU CUCGAGGGAAGUUAGGUU  gu cucccuuuc    acca ccaa gu ga ggcc aguac uguggg     ucacguc   acu g a
-uc   -  -  c    c   ---------------------  C                  -C  g         uacu    c    -  a  g    c     g      uacgu       --c   c u 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR159c

• Accession: MIMAT0001662
• Description: Saccharum officinarum sof-miR159c mature miRNA
• Sequence: 199 - CUUGGAUUGAAGGGAGCUCCU - 219
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13