Stem-loop sequence mtr-MIR399a

Accession

MI0001749 (change log)

Description

Medicago truncatula miR399a stem-loop

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399a
(24 sentences)

Stem-loop

   ucca        uu    ua a   ug   u    a         a  uagu     ---u     a     
5'     aguugcag  gaau  c ggg  agu cucc uuggcaggu gc    cacua    augau ugca 
       ||||||||  ||||  | |||  ||| |||| ||||||||| ||    |||||    ||||| ||| u
3'     ucaacguc  cuua  g ccc  uua gagg aaccgucua cg    gugau    uacua acgu 
   -auc        cu    gc a   gu   -    a         a  ---u     ucuu     -     

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 23163782-23163915 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR399a

• mtr-MIR399g: chr8: 24230599-24230702 [+]
• mtr-MIR399f: chr8: 24222878-24222981 [+]
• mtr-MIR399g: chr8: 24161515-24161618 [+]
• mtr-MIR399f: chr8: 24153821-24153924 [+]
• mtr-MIR399g: chr8: 23994507-23994610 [+]
• mtr-MIR399f: chr8: 23986801-23986904 [+]
• mtr-MIR399f: chr8: 23166508-23166611 [-]
• mtr-MIR399a: chr8: 23163782-23163915 [-]
• mtr-MIR399g: chr8: 23158805-23158908 [-]

Database links

• miRBase Tracker:MI0001749

Mature sequence mtr-miR399a

• Accession: MIMAT0001651
• Sequence: 95 - ugccaaaggagauuugcccag - 115
• Evidence: experimental; Northern [2]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).