Stem-loop sequence mtr-MIR399c

Accession

MI0001748 (change log)

Description

Medicago truncatula miR399c stem-loop

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399c
(22 sentences)

Stem-loop

   guucu     ug  g    a     a                 ga    uaaaaa    a 
5'      gcugu  ag aaug uaggg aaaucucuuuuggcaga  ggag      ucuu a
        |||||  || |||| ||||| |||||||||||||||||  ||||      ||||  
3'      cgaca  uu uuac guccc uuuagaggaaaccguuu  ucuu      agga a
   guuau     gu  -    c     g                 gg    --ugua    c 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (JCVI_Mt3.5.2)	Overlapping transcripts
chr8: 24010865-24010983 [-]	intergenic
chr8: 24182595-24182713 [-]	intergenic

Clustered miRNAs

< 10kb from mtr-MIR399c

• mtr-MIR399c: chr8: 24182595-24182713 [-]
• mtr-MIR5246: chr8: 24180980-24181049 [-]
• mtr-MIR399k: chr8: 24176682-24176775 [-]
• mtr-MIR399j: chr8: 24173628-24173718 [+]
• mtr-MIR399r: chr8: 24012653-24012754 [+]
• mtr-MIR399c: chr8: 24010865-24010983 [-]
• mtr-MIR5246: chr8: 24009245-24009314 [-]
• mtr-MIR399k: chr8: 24004937-24005030 [-]
• mtr-MIR399j: chr8: 24001880-24001970 [+]

Database links

• miRBase Tracker:MI0001748

Mature sequence mtr-miR399c

• Accession: MIMAT0001650
• Sequence: 80 - ugccaaaggagauuugcccug - 100
• Evidence: by similarity; MI0001054

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).