Stem-loop sequence mtr-MIR393a

Accession

MI0001745 (change log)

Previous IDs

mtr-MIR393

Description

Medicago truncatula miR393 stem-loop

Gene family

MIPF0000083; MIR393

Literature search

4 open access papers mention mtr-MIR393a
(8 sentences)

Stem-loop

   aacu  a   u       c            c    u       uaauauuucaacuuuagucacuu 
5'     gc acu gaggagg auccaaagggau gcau gauccua                       u
       || ||| ||||||| |||||||||||| |||| |||||||                       a
3'     cg uga uuccucu uagguuucccua cgua cuagggu                       a
   -cau  a   u       u            c    -       uaauucauaauauacucucuuuu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 21952259-21952393 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001745

Mature sequence mtr-miR393a

• Accession: MIMAT0001647
• Previous IDs: mtr-miR393
• Sequence: 21 - uccaaagggaucgcauugauc - 41
• Evidence: experimental; Northern [2]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).