miRBase entry: mtr-MIR169a

Stem-loop mtr-MIR169a


Accession
MI0001741
Description
Medicago truncatula mtr-MIR169a precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
12 open access papers mention mtr-MIR169a
(54 sentences)

Sequence

aagaggcagagagaguaaugCAGCCAAGGAUGACUUGCCGAcaacauuggcgaauguucaugugauuucugccucauugugccggcaaguuguccuuggcuauguuagucucucaucuucu
.(((((..((((((.(((((.(((((((((((((((((((.((.((..((((((...((....)).))).)))....)))).))))))))))))))))))).))))).))))))..)))))

Structure
a     ca      g     C                   A  a  --uu   -   ugu  a 
 agagg  gagaga uaaug AGCCAAGGAUGACUUGCCG ca ca    ggc gaa   uc u
 |||||  |||||| ||||| ||||||||||||||||||| || ||    ||| |||   ||  
 ucuuc  cucucu auugu ucgguuccuguugaacggc gu gu    ccg cuu   ag g
-     ua      g     a                   c  -  uacu   u   --u  u 


Annotation confidence Not enough data
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Genome context
contig_79842: 860-980 [+]

Database links

Mature mtr-miR169a

Accession MIMAT0001643
Description Medicago truncatula mtr-miR169a mature miRNA
Sequence 21 - CAGCCAAGGAUGACUUGCCGA - 41
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98