Stem-loop sequence mmu-mir-452

Accession

MI0001734 (change log)

Symbol

MGI:Mir452

Description

Mus musculus miR-452 stem-loop

Gene family

MIPF0000287; mir-452

Literature search

8 open access papers mention mmu-mir-452
(14 sentences)

Stem-loop

     u     g    aa  g        g  a        uuua 
5' gc aagca uuac  cu uuugcaga ga acugagac    u
   || ||||| ||||  || |||||||| || ||||||||    a
3' cg uucgu aaug  ga aaacgucu cu ugacucug    a
     u     g    --  g        a  c        uauc 

Deep sequencing

4334 reads, 1.56 reads per million, 64 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 72262224-72262308 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000043192 ; Gabre-004; intron 5

  OTTMUST00000043189 ; Gabre-001; intron 6

  ENSMUST00000148499 ; Gabre-004; intron 5

  ENSMUST00000064780 ; Gabre-001; intron 6

Clustered miRNAs

< 10kb from mmu-mir-452

• mmu-mir-452: chrX: 72262224-72262308 [-]
• mmu-mir-224: chrX: 72261031-72261112 [-]

Database links

• EntrezGene:Mir452
• MGI:Mir452
• RNAcentral:URS000064574E_10090
• miRBase Tracker:MI0001734

Mature sequence mmu-miR-452-5p

• Accession: MIMAT0001637
• Previous IDs: mmu-miR-452
• Sequence: 17 - uguuugcagaggaaacugagac - 38
• Deep sequencing: 4175 reads, 62 experiments
• Evidence: experimental; Illumina [2-3]
• Database links:
  • RNAcentral:URS0000587A5B_10090
• Predicted targets:
  • miRDB:mmu-miR-452-5p
  • microrna.org:mmu-miR-452-5p

Mature sequence mmu-miR-452-3p

• Accession: MIMAT0017194
• Sequence: 53 - ucagucucaucugcaaagaggu - 74
• Deep sequencing: 157 reads, 23 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000007C612_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-452-3p
  • miRDB:mmu-miR-452-3p

References

1. PMID:15891114 "Clustering and conservation patterns of human microRNAs" Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H Nucleic Acids Res. 33:2697-2706(2005).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).