Stem-loop rno-mir-433

Accession

MI0001724

Description

Rattus norvegicus rno-mir-433 precursor miRNA

Gene family

MIPF0000177; mir-433

Literature search

14 open access papers mention rno-mir-433
(193 sentences)

Sequence

59038 reads, 1284 reads per million, 313 experiments

ccggggagaagUACGGUGAGCCUGUCAUUAUUCagagaggcuagauccucuguguugagaaggAUCAUGAUGGGCUCCUCGGUGUucuccagg
((..((((((...(((.(((((((((((.(((((.(((((......))))).))........))).))))))))))).)))...)))))).))

Structure

  gg      gUA   U           U   --------  g     cu 
cc  ggagaa   CGG GAGCCUGUCAU AUU        Ca agagg  a
||  ||||||   ||| ||||||||||| |||        || |||||   
gg  ccucuU   GCU CUCGGGUAGUA UAg        gu ucucc  g
  -a      GUG   C           C   gaagaguu  g     ua 

Annotation confidence High

Genome context

chr6: 133712334-133712426 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from rno-mir-433

Mature rno-miR-433-5p

• Accession: MIMAT0017192
• Description: Rattus norvegicus rno-miR-433-5p mature miRNA
• Sequence: 12 - UACGGUGAGCCUGUCAUUAUUC - 33
• Evidence: experimental ; SOLiD [3]

Mature rno-miR-433-3p

• Accession: MIMAT0001628
• Description: Rattus norvegicus rno-miR-433-3p mature miRNA
• Sequence: 64 - AUCAUGAUGGGCUCCUCGGUGU - 85
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 15891114
   Clustering and conservation patterns of human microRNAs
   "Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H"
   "Nucleic Acids Res (2005) 33:2697-2706


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249