Stem-loop sequence osa-MIR437

Accession

MI0001688 (change log)

Description

Oryza sativa miR437 stem-loop

Gene family

MIPF0000746; MIR437

Literature search

8 open access papers mention osa-MIR437
(14 sentences)

Stem-loop

                  ug  uu      u         g         a      u                   u     aauuaacaucuaaaau     au     -ca  a 
5' cccucuguuucauau  ua  guguuu aguuuuguu uaagucaaa uucuuu acuuugaccaaguuuguag aaaau                accaa  aaaua   cu u
   |||||||||||||||  ||  |||||| ||||||||| ||||||||| |||||| ||||||||||||||||||| |||||                |||||  |||||   ||  
3' gggagacaagguaua  au  cacaaa ucaaaacag auucaguuu aagaga ugaaacugguucaaauauc uuuua                ugguu  uuuau   ga u
                  gu  uc      -         g         g      u                   u     --------------gu     -c     aca  g 

Deep sequencing

161 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr2: 17050336-17050548 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR437

• osa-MIR437: Chr2: 17050336-17050548 [-]
• osa-MIR5147: Chr2: 17049859-17050224 [-]

Database links

• miRBase Tracker:MI0001688

Mature sequence osa-miR437

• Accession: MIMAT0001586
• Previous IDs: osa-MIR437
• Sequence: 155 - aaaguuagagaaguuugacuu - 175
• Deep sequencing: 31 reads, 2 experiments
• Evidence: experimental; cloned [1], Illumina [2]
• Database links:
  • RNAcentral:URS0000451126_39947

References

1. PMID:15805478 "Cloning and characterization of microRNAs from rice" Sunkar R, Girke T, Jain PK, Zhu JK Plant Cell. 17:1397-1411(2005).
2. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).