Stem-loop rno-mir-365

Accession

MI0001656

Description

Rattus norvegicus rno-mir-365 precursor miRNA

Gene family

MIPF0000061; mir-365

Literature search

13 open access papers mention rno-mir-365
(248 sentences)

Sequence

28037 reads, 67 reads per million, 480 experiments

acagcaagaaaaauGAGGGACUUUCAGGGGCagcuguguuuccugacucagucaUAAUGCCCCUAAAAAUCCUUAUuguucuugca
...(((((((.((((((((..(((.(((((((((((.(((....))).)))).....))))))).))).)))))))).))))))).

Structure

aca       a        AC   C       -----    u   u 
   gcaagaa aauGAGGG  UUU AGGGGCa     gcug guu c
   ||||||| ||||||||  ||| |||||||     |||| |||  
   cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
--a       g        -A   A       AAUac    u   u 

Annotation confidence High

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR245. The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).

Genome context

chr10: 67079796-67079881 [+]

Mature rno-miR-365-5p

• Accession: MIMAT0017184
• Description: Rattus norvegicus rno-miR-365-5p mature miRNA
• Sequence: 15 - GAGGGACUUUCAGGGGC - 31
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-365-3p

• Accession: MIMAT0001549
• Description: Rattus norvegicus rno-miR-365-3p mature miRNA
• Sequence: 55 - UAAUGCCCCUAAAAAUCCUUAU - 76
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345