Stem-loop sequence mmu-mir-450a-1

AccessionMI0001653 (change log)
Previous IDsmmu-mir-450;mmu-mir-450-1
DescriptionMus musculus miR-450a-1 stem-loop
Gene family MIPF0000128; mir-450
Literature search

7 open access papers mention mmu-mir-450a-1
(82 sentences)

   --gaga     u         u     u              ugc 
5'       gauac gagcuguuu ugcga guguuccuaauaug   u
         ||||| ||||||||| ||||| ||||||||||||||   a
3'       cugug uucgauaaa acguu uacaaggguuauau   u
   acauaa     u         u     u              uaa 
Get sequence
Deep sequencing
36553 reads, 109 reads per million, 105 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

Xie et al. [1] refer to this sequence by the internal identifier MIR238. The sequence is unrelated to C. elegans mir-238 (MI0000313).

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chrX: 53048154-53048244 [-]
Clustered miRNAs
< 10kb from mmu-mir-450a-1
mmu-mir-322chrX: 53054255-53054349 [-]
mmu-mir-503chrX: 53053984-53054054 [-]
mmu-mir-351chrX: 53053255-53053353 [-]
mmu-mir-542chrX: 53049403-53049487 [-]
mmu-mir-450a-2chrX: 53048299-53048367 [-]
mmu-mir-450a-1chrX: 53048154-53048244 [-]
mmu-mir-450bchrX: 53047997-53048078 [-]
Database links

Mature sequence mmu-miR-450a-5p

Accession MIMAT0001546
Previous IDsmmu-miR-450;mmu-miR-450a-5p;mmu-miR-450a

18 - 


 - 39

Get sequence
Deep sequencing60635 reads, 102 experiments
Evidence experimental; cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature sequence mmu-miR-450a-1-3p

Accession MIMAT0017182
Previous IDsmmu-miR-450a-1*

53 - 


 - 74

Get sequence
Deep sequencing6237 reads, 98 experiments
Evidence experimental; Illumina [4]
Database links
Predicted targets


PMID:15735639 "Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals" Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M Nature. 434:338-345(2005).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).