Stem-loop rno-mir-449a

Accession

MI0001650

Description

Rattus norvegicus rno-mir-449a precursor miRNA

Gene family

MIPF0000133; mir-449

Literature search

14 open access papers mention rno-mir-449a
(55 sentences)

Sequence

37578 reads, 1358 reads per million, 374 experiments

cugugugcgauggguUGGCAGUGUAUUGUUAGCUGGUugaguauguaaaaggcacCAGCUAACAUGCAACUGCUCUCcuauugcacauaca
.(((((((((((((..((((((((((.((((((((((................)))))))))))))).))))))..)))))))))))))..

Structure

-c             uU      -    U          ugaguau 
  ugugugcgauggg  GGCAGU GUAU GUUAGCUGGU       g
  |||||||||||||  |||||| |||| ||||||||||        
  auacacguuaucC  UCGUCA CGUA CAAUCGACca       u
ac             UC      A    -          cggaaaa 

Annotation confidence High

Genome context

chr2: 44897601-44897691 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-449a

Mature rno-miR-449a-5p

• Accession: MIMAT0001543
• Description: Rattus norvegicus rno-miR-449a-5p mature miRNA
• Sequence: 16 - UGGCAGUGUAUUGUUAGCUGGU - 37
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-449a-3p

• Accession: MIMAT0017181
• Description: Rattus norvegicus rno-miR-449a-3p mature miRNA
• Sequence: 56 - CAGCUAACAUGCAACUGCUCUC - 77
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249