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miRBase |
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Stem-loop sequence mmu-mir-449a |
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Accession | MI0001649 (change log) | |||||||
Previous IDs | mmu-mir-449 | |||||||
Symbol | MGI:Mir449a | |||||||
Description | Mus musculus miR-449a stem-loop | |||||||
Gene family | MIPF0000133; mir-449 | |||||||
Literature search |
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72 open access papers mention mmu-mir-449a | |||||||
Stem-loop |
-c ug cuu - u uga au 5' ugugug augg ggcagu guau guuagcuggu gu g |||||| |||| |||||| |||| |||||||||| || 3' acacac uauc ucguca cgua caaucgacca cg u ac gu cuc g - cgg ag |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
Xie et al. [1] refer to this sequence by the internal identifier MIR54. The sequence is unrelated to C. elegans mir-54 (MI0000025). |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence mmu-miR-449a-5p |
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Accession | MIMAT0001542 |
Previous IDs | mmu-miR-449;mmu-miR-449a |
Sequence |
16 - uggcaguguauuguuagcuggu - 37 |
Deep sequencing | 45047 reads, 91 experiments |
Evidence | experimental; cloned [2], Illumina [3-4] |
Database links |
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Predicted targets |
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Mature sequence mmu-miR-449a-3p |
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Accession | MIMAT0017180 |
Previous IDs | mmu-miR-449a* |
Sequence |
56 - cagcuaacaugcgacugcucuc - 77 |
Deep sequencing | 137 reads, 30 experiments |
Evidence | experimental; Illumina [4] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:15735639
"Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals"
Nature. 434:338-345(2005).
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2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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3 |
PMID:20215419
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
Mol Hum Reprod. 16:463-471(2010).
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4 |
PMID:20413612
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
Genes Dev. 24:992-1009(2010).
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