Stem-loop sequence rno-mir-429

AccessionMI0001643 (change log)
DescriptionRattus norvegicus miR-429 stem-loop
Gene family MIPF0000019; mir-8
Literature search

18 open access papers mention rno-mir-429
(43 sentences)

   u   ugcu        u -          ug       cu   u 
5'  gcc    gauggaug c uuaccagaca  guuagau  gga g
    |||    |||||||| | ||||||||||  |||||||  |||  
3'  cgg    cuaccugc g aauggucugu  uaaucug  ucu u
   -   -uac        c u          ca       --   a 
Get sequence
Deep sequencing
653057 reads, 578 reads per million, 461 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?

Xie et al. [1] refer to this sequence by the internal identifier MIR201. The sequence is unrelated to mouse mir-201 (MI0000244).

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr5: 173488331-173488415 [-]
Clustered miRNAs
< 10kb from rno-mir-429
rno-mir-200bchr5: 173490144-173490238 [-]
rno-mir-200achr5: 173489366-173489454 [-]
rno-mir-3548chr5: 173489353-173489472 [+]
rno-mir-429chr5: 173488331-173488415 [-]
Database links

Mature sequence rno-miR-429

Accession MIMAT0001538

53 - 


 - 74

Get sequence
Deep sequencing652485 reads, 460 experiments
Evidence experimental; cloned [2], Northern [2]
Predicted targets


PMID:15735639 "Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals" Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M Nature. 434:338-345(2005).