Stem-loop sequence mmu-mir-448

AccessionMI0001638 (change log)
Symbol MGI:Mir448
DescriptionMus musculus miR-448 stem-loop
Gene family MIPF0000149; mir-448
Literature search

8 open access papers mention mmu-mir-448
(17 sentences)

Stem-loop 
   -----------a g       u a            g   u     ga au    a   ca 
5'             c aggaggu g acauccugcaua ugc gccag  a  cccu cuu  u
               | ||||||| | |||||||||||| ||| |||||  |  |||| |||   
3'             g uccucua c uguaggauguau acg ugguc  u  gggg gaa  a
   acugcuucaccc g       c c            -   u     gg cg    a   uc
Get sequence
Deep sequencing
2872 reads, 3.7 reads per million, 27 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR64. The sequence is unrelated to C. elegans mir-64 (MI0000035).

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chrX: 147158210-147158321 [+]
sense
OTTMUST00000045548 ; Htr2c-002; intron 4
OTTMUST00000045549 ; Htr2c-003; intron 4
OTTMUST00000045552 ; Htr2c-006; intron 4
OTTMUST00000045515 ; Htr2c-001; intron 5
ENSMUST00000112831 ; Htr2c-006; intron 4
ENSMUST00000156697 ; Htr2c-003; intron 4
ENSMUST00000036303 ; Htr2c-002; intron 4
ENSMUST00000096299 ; Htr2c-001; intron 5
Database links

Mature sequence mmu-miR-448-5p

Accession MIMAT0017176
Sequence

12 -  

gaacauccugcauagugcugcc

 - 33

Get sequence
Deep sequencing406 reads, 18 experiments
Evidence experimental; Illumina [3]
Database links
Predicted targets

Mature sequence mmu-miR-448-3p

Accession MIMAT0001533
Previous IDsmmu-miR-448
Sequence

72 -  

uugcauauguaggaugucccau

 - 93

Get sequence
Deep sequencing2460 reads, 26 experiments
Evidence experimental; Illumina [2-3]
Database links
Predicted targets

References

1
PMID:15735639 "Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals" Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M Nature. 434:338-345(2005).
2
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).