Stem-loop sequence aga-mir-100

Accession

MI0001603 (change log)

Description

Anopheles gambiae miR-100 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

3 open access papers mention aga-mir-100
(3 sentences)

Stem-loop

      --     u ug   a      g     aa      -  gcacu 
5' gcc  ccguc g  gaa cccgua auccg  cuugug cu     g
   |||  ||||| |  ||| |||||| |||||  |||||| ||     u
3' cgg  ggcag u  cuu ggguau uaggc  gaacac gg     a
      uu     c gu   a      a     aa      a  ucaac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr3R: 10274677-10274768 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-100

• aga-mir-100: chr3R: 10274677-10274768 [-]
• aga-let-7: chr3R: 10270708-10270797 [-]
• aga-mir-125: chr3R: 10270160-10270271 [-]

Database links

• miRBase Tracker:MI0001603

Mature sequence aga-miR-100

• Accession: MIMAT0001498
• Sequence: 15 - aacccguagauccgaacuugug - 36
• Evidence: by similarity; MI0000378