miRBase entry: ame-mir-2-2

Stem-loop ame-mir-2-2


Accession
MI0001590
Description
Apis mellifera ame-mir-2-2 precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
3 open access papers mention ame-mir-2-2
(8 sentences)

Sequence

ucgacuguuccucccaucagagugguugugaugugguaacuuggacucgUAUCACAGCCAGCUUUGAUGAGCggaacggugcga
(((((((((((.(.(((((((((((((((((((((((.......)).))))))))))))).)))))))).).)))))))).)))

Structure
   -        u c        -             -  aa 
ucg acuguucc c caucagag ugguugugaugug gu  c
||| |||||||| | |||||||| ||||||||||||| ||  u
agc uggcaagg G GUAGUUUC ACCGACACUAUgc ca  u
   g        C A        G             u  gg 


Annotation confidence Not enough data
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Genome context
CM000054.5: 1247873-1247956 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ame-mir-2-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-2-3p

Accession MIMAT0001485
Description Apis mellifera ame-miR-2-3p mature miRNA
Sequence 50 - UAUCACAGCCAGCUUUGAUGAGC - 72
Evidence experimental
RTPCR [1], Illumina [2]

References

  1. PubMed ID: 17543122
    Computational and transcriptional evidence for microRNAs in the honey bee genome
    Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
    Genome Biol (2007) 8:R97

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670