Stem-loop sequence ame-mir-2-2

Accession

MI0001590 (change log)

Description

Apis mellifera miR-2-2 stem-loop

Gene family

MIPF0000049; mir-2

Literature search

3 open access papers mention ame-mir-2-2
(8 sentences)

Stem-loop

      -        u c        -             -  aa 
5' ucg acuguucc c caucagag ugguugugaugug gu  c
   ||| |||||||| | |||||||| ||||||||||||| ||  u
3' agc uggcaagg g guaguuuc accgacacuaugc ca  u
      g        c a        g             u  gg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AMEL4.5; GCA_000002195.1): CM000054.5: 1247873-1247956 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ame-mir-2-2

• ame-mir-71: CM000054.5: 1245684-1245783 [+]
• ame-mir-2-3: CM000054.5: 1246071-1246170 [+]
• ame-mir-13a: CM000054.5: 1246352-1246451 [+]
• ame-mir-13b: CM000054.5: 1246714-1246792 [+]
• ame-mir-2-1: CM000054.5: 1246924-1247012 [+]
• ame-mir-2b: CM000054.5: 1246930-1247007 [-]
• ame-mir-2-2: CM000054.5: 1247873-1247956 [+]

Database links

• EntrezGene:Mir2-2
• miRBase Tracker:MI0001590

Mature sequence ame-miR-2-3p

• Accession: MIMAT0001485
• Sequence: 50 - uaucacagccagcuuugaugagc - 72
• Evidence: experimental; RTPCR [1], Illumina [2]

References

1. PMID:17543122 "Computational and transcriptional evidence for microRNAs in the honey bee genome" Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG Genome Biol. 8:R97(2007).
2. PMID:22409512 "Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome" Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y Genes Brain Behav. 11:660-670(2012).